PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G019300.1.p
Common NameGLYMA_09G019300, LOC100814986
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 673aa    MW: 77606.8 Da    PI: 7.5455
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G019300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.82.3e-2062145189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          ++Y  YAkevGF+vr+++s  +++++e + + ++Cs +g+++ +  +     + r+etrtgC a++++++ ++++w+v ++ leHnH l
  Glyma.09G019300.1.p  62 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKVVN-----HLRKETRTGCPAMIRMRLVESQRWRVLEVTLEHNHML 145
                          5899***************************************9988.....999********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1762145IPR004330FAR1 DNA binding domain
PfamPF105514.1E-31264357IPR018289MULE transposase domain
PfamPF044341.6E-4540583IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.644551587IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MEESSLCCEQ LPDGECIEVV QKDKEDDTLI ELDCQNGFPE GRKEFVAPAV GMEFESYDDA  60
YNYYICYAKE VGFRVRVKNS WFKRNSREKY GAVLCCSSQG FKRIKVVNHL RKETRTGCPA  120
MIRMRLVESQ RWRVLEVTLE HNHMLGAKIL RSVKKMGNGT KRKPLPCSEA EGQTVKLYRA  180
LVIDAGGNGN SNCGAIEDRT FSESSNKLNL RKGDTQAIYN FLCRMQLTIP NFFYLMDFND  240
DGHLRNAFWV DARSRASCGY FGDVIYFDNT YLSNKFEIPL VTFVGINHHG QSVLLGCGLL  300
ASETTESYLW LLRTWLKCMS GCSPQTIITD RCKALQSAIV EVFPKSHHCF GLSLIMKKVP  360
EKLGGLHNYD AIRKALIKAV YETLKVIEFE AAWGFMIQRF GVSDHEWLRS LYEDRVRWAP  420
VYLKDIFFAG MSAARPGESI NPFFDRYVHK QTPLKEFLDK YELALHKKHK EESFSDIESR  480
SSSPLLKTRC SFELQLSRMY TREMFMKFQL EVEEVYSCFG TTQLHVDGPI IIFLVKERVL  540
IEGNRREIRD FEVLYSRTAG EVRCICSCFN FYGYLCRHAL CVLNFNGVEE IPHKYILSRW  600
KKDYKHPNHS SGGANDTDCT NDTDRIQWSN QLFRSALQVV EEGILSLDHY NVALQSLEES  660
LSKVHDVERR QE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535036.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_006586816.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLI1L0A10.0I1L0A1_SOYBN; Uncharacterized protein
STRINGGLYMA09G02250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6